Adds db::recover, a discovery + recovery layer for pipeline items that
got half-written before the Stage 1 fix landed (content in content
store + SQLite shadow, no live CRDT entry). For each orphan, the
content body is re-anchored to a fresh non-tombstoned id and the old
id's content row is cleared.
Exposed as the recover_half_written_items MCP tool. dry_run defaults
to true so the caller can review what would change before mutating.
YAML front-matter parsing is hand-rolled and scoped to the three
fields the create_*_file path emits (name, type, depends_on). It
tolerates missing or malformed lines by falling back to safe
defaults; the orphan is recovered with the best metadata we can pull
from the body and the rest is left to the operator to fix up.
The discovery step is read-only and idempotent. Recovery is also
idempotent in the sense that once an orphan is lifted, the next
discovery pass won't see it.
Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
Final 929 sweep: every YAML-shaped helper is gone. No production code
parses or writes YAML front matter anywhere.
Surface removed:
- db/yaml_legacy.rs (FrontMatter/StoryMetadata structs, parse_front_matter,
set_front_matter_field, yaml_residue marker) — file deleted.
- ItemMeta::from_yaml — deleted; callers pass typed ItemMeta::named(...) or
ItemMeta::default() and use typed CRDT setters (set_depends_on,
set_blocked, set_retry_count, set_agent, set_qa_mode, set_review_hold,
set_item_type, set_epic, set_mergemaster_attempted) for the rest.
- write_coverage_baseline_to_story_file + read_coverage_percent_from_json —
the coverage_baseline YAML field was write-only (nothing read it back);
removed along with its caller in agent_tools/lifecycle.rs.
- update_story_in_file's generic `front_matter` HashMap parameter —
tool_update_story now intercepts every known field name and routes it
to a typed CRDT setter; unknown keys are rejected with an explicit error
pointing at the typed setters. The function only takes user_story /
description sections now.
- All 117 ItemMeta::from_yaml callsites migrated. Where tests previously
passed a YAML-shaped content blob and relied on the helper to extract
name/depends_on/blocked/agent/qa, they now pass:
write_item_with_content(id, stage, content, ItemMeta::named("Foo"))
crate::crdt_state::set_depends_on(id, &[...]) // when needed
crate::crdt_state::set_blocked(id, true) // when needed
crate::crdt_state::set_agent(id, Some("...")) // when needed
- write_story_content + write_story_file (test helper) now take an
explicit `name: Option<&str>` instead of parsing it from content.
- db::ops::move_item_stage stopped re-parsing YAML on every stage
transition; metadata is read straight from the CRDT view when mirroring
the row into SQLite.
New CRDT setters added for symmetry:
- crdt_state::set_name (mirrors set_agent — explicit name updates).
cargo fmt --check, clippy --all-targets -- -D warnings, and the
2830-test suite all pass.
Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
Before: handle_message.rs acquired services.perm_rx only while processing
one chat message and dropped it on chat_fut completion. The moment the
bot wasn't actively responding, prompt_permission auto-denied any spawned
coder bash call as "no interactive session" — making unattended coder
work impossible.
Now: a permission_listener task is spawned at bot startup and holds
perm_rx for the bot's lifetime. Permission requests are forwarded to
the first configured Matrix room, replies resolved by the existing
on_room_message handler via pending_perm_replies. Per-message acquire is
gone from handle_message.rs (chat_fut just awaits cleanly).
- New module: chat/transport/matrix/bot/permission_listener.rs.
- Wired into run_bot before BotContext construction; bot_sent_event_ids
is hoisted out so the listener and the rest of the bot share it.
- handle_message.rs no longer touches perm_rx.
- diagnostics/permission.rs comment updated to reflect the new reality.
- Regression test asserts the listener forwards a PermissionForward to
the target room and records the pending reply key — exactly the path
that was broken when no chat_fut was in flight.
Discord/Slack/WhatsApp transports still acquire perm_rx per message
(commands.rs:368 / commands/llm.rs:83 / commands/llm.rs:82). They are
not the active transport in this deployment so their per-message acquire
remains dormant; the same listener pattern should be applied to them as
follow-up work in 884 phase 2.
The 861-line diagnostics.rs is split:
- permission.rs: tool_prompt_permission + helpers + their tests (584 lines)
- usage.rs: tool_get_token_usage + tests (122 lines)
- mod.rs: server_logs, rebuild, version, loc_file, dump_crdt, move_story + tests (185 lines)
Tests stay co-located. The bigger sub-modules (permission at 584 with tests
mostly under 800; usage at 122) are well within the 800-line guide.
Also added #[allow(unused_imports)] to two now-pedantic re-exports in
service/diagnostics/mod.rs that the split made flag.
All 2636 tests pass; clippy clean.
Timmy
dave